DNA Sequence Correlations Shape Nonspecific Transcription Factor-DNA Binding Affinity

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DNA sequence correlations shape nonspecific transcription factor-DNA binding affinity.

Transcription factors (TFs) are regulatory proteins that bind DNA in promoter regions of the genome and either promote or repress gene expression. Here, we predict analytically that enhanced homooligonucleotide sequence correlations, such as poly(dA:dT) and poly(dC:dG) tracts, statistically enhance nonspecific TF-DNA binding affinity. This prediction is generic and qualitatively independent of ...

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DNA binding specificities of transcription factors (TFs) are a key component of gene regulatory processes. Underlying mechanisms that explain the highly specific binding of TFs to their genomic target sites are poorly understood. A better understanding of TF-DNA binding requires the ability to quantitatively model TF binding to accessible DNA as its basic step, before additional in vivo compone...

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ژورنال

عنوان ژورنال: Biophysical Journal

سال: 2011

ISSN: 0006-3495

DOI: 10.1016/j.bpj.2011.04.037